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Microbiology · Introduction to microbiology and immunology

Physiological period in microbiology

The physiological period in the development of microbiology began in the 19th century and continues to the present day. During this era, science made a qualitative leap: researchers moved from simply noting the existence of microbes to a deep study of their physiology, biological properties, and role in the pathogenesis of diseases.

Chronology of the periodBegan in the 19th century and continues to this day.
Shift in focusTransition from the discovery of microorganisms to the study of their functions and role in pathology.
StereochemistryFounded by Pasteur after proving that fungi assimilate only specific isomers.
Henle–Koch postulatesA set of criteria to prove the causal link between a microbe and a specific infectious disease.
4 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

Louis Pasteur's contribution to science

Louis Pasteur (1822–1895) was an eminent French scientist with a background in chemistry. Thanks to his unique experimental talent, he became the founder of several scientific fields at once: microbiology, biotechnology, disinfectology, and stereochemistry.

He began his scientific journey in chemistry. At the age of 26, Pasteur successfully defended his dissertation on arsenic compounds (potassium, sodium, and ammonia). Observing the growth of fungi, the researcher made a key discovery: microorganisms are capable of assimilating exclusively specific stereoisomers. This observation made him the father of a new science — stereochemistry.

Later, Pasteur turned to the study of fermentation processes, which at that time were dominated by Justus von Liebig's chemical theory. Pasteur experimentally proved that alcoholic, lactic acid, and acetic acid fermentations are purely biological processes. They are initiated by microorganisms and the specific enzymes they secrete. This is how modern biotechnology originated.

The scientist's most high-profile triumph was refuting the ancient dogma of spontaneous generation. For centuries, it was believed that living matter could arise from non-living matter (e.g., microbes from dirt or frogs from silt). Pasteur conducted an elegant experiment:

  • He used a flask with nutrient broth equipped with a spirally curved tube (a "swan neck").
  • The internal environment of the flask communicated with the surrounding air, but microbes and dust settled in the glass bends.
  • As a result, the broth remained sterile, and life did not originate in it.
  • However, when the tube was removed and the liquid came into direct contact with the air, the broth rapidly grew microorganisms.

In addition, Pasteur discovered for the first time the existence of anaerobiosis — the ability of bacteria to live and reproduce without access to oxygen.

Pasteurization and immunology

Studying the causes of putrefaction and so-called "diseases of wine," Pasteur proved the key role of microbes in these processes. To preserve beverages, he developed an effective method of heating liquids to 50–60 °C. This temperature treatment led to the reliable destruction of vegetative forms of bacteria.

Subsequently, this method was named pasteurization. Pasteur's work in this direction formed the basis of modern fundamental principles of asepsis and disinfection. In the field of immunology, the researcher also made a breakthrough by developing the basic principle of vaccination and the first methods for producing vaccines.

Test your knowledge on this topicAssignments from the Microbiology course bank — instant answers and explanations.

Methodology and etiology of Robert Koch

Robert Koch (1843–1910) was an outstanding German bacteriologist who revolutionized laboratory practice and research methodology. He focused on improving techniques for working with microorganisms.

Koch made a colossal contribution to the development of microbiology by proposing new methods for staining bacterial cells. He was the first to introduce microphotography into everyday practice, which made it possible to document observation results. Koch's most important achievement was the development of reliable algorithms for obtaining pure cultures of microorganisms.

Henle–Koch postulates

The concept allowing one to prove that a specific microbe is the causative agent of a particular infectious disease was originally proposed by Jakob Henle. However, Robert Koch finally formulated and developed this principle.

The postulates include three mandatory conditions:

  1. The microorganism must be found exclusively in patients with the given infection and not detected in healthy individuals.
  2. The causative agent must be isolated from the body as a pure culture.
  3. Artificial infection of laboratory animals with this pure culture must reproduce a similar disease.

Despite its historical fundamentality, in modern clinical medicine the postulates have relative significance and are not always feasible. There are two main reasons for this:

  • The impossibility of reproducing certain human diseases in animals (e.g., HIV infection).
  • The phenomenon of healthy carriage, in which the pathogen is present in the body, but the clinical picture is completely absent.

Briefly: answers to topical questions

Which vaccines were first developed by Louis Pasteur?

Louis Pasteur developed vaccines against fowl cholera, anthrax, and rabies. The rabies vaccine was the first live attenuated vaccine derived from the brain of infected rabbits and dogs; its efficacy was proven for prophylaxis and treatment after a bite.

How to memorize

To remember the essence of the Henle–Koch postulates, use the "Find, Isolate, Replicate" algorithm: 1. Find in the patient (and do not find in the healthy) → 2. Isolate (obtain a pure culture) → 3. Replicate the disease (infect an animal).

Class and exam questions

Which theory of fermentation dominated science before Pasteur's discoveries?

Before Pasteur's work, Liebig's chemical theory dominated, which denied the biological nature of this process.

What was the purpose of the swan-neck flask experiment?

The spirally curved tube allowed air to pass through while trapping dust and microorganisms in the bends. This made it possible to prove that microbes do not originate in the broth by themselves, but enter it from the outside.

Why are the Henle–Koch postulates not a universal rule in modern medicine?

It does not account for the existence of healthy microbial carriage and the fact that many human-specific infections (e.g., HIV) cannot be reproduced in laboratory animals.

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What else to study on this topic

  • Principles of vaccination and methods of vaccine production according to Pasteur
  • Specifics of lactic acid, alcoholic, and acetic acid fermentation
  • Methods of bacterial staining proposed by Robert Koch
  • Technique for obtaining and culturing pure cultures of microorganisms

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