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Biology · Periodization of Ontogenesis

Gastrulation

Gastrulation is a crucial stage in the individual development of organisms, representing the process of germ layer formation. During this stage, part of the cellular material from the blastula surface moves inward to the sites where organs will subsequently develop. The process culminates in the formation of the gastrula, a bilayered or trilayered embryo.

Main OutcomeFormation of a gastrula consisting of an outer ectoderm and an inner endoderm.
Third Germ LayerThe mesoderm forms in all multicellular organisms except sponges and cnidarians.
Fate of the BlastoporeIn protostomes, it becomes the mouth; in deuterostomes, it becomes the anus.
5 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

Formation of Germ Layers

During the migration of cells and entire sections of the blastula wall, the fundamental layers of the embryo, known as germ layers, are formed. All types of tissues and organs will subsequently develop from this initially relatively homogeneous cellular mass.

There are three main germ layers:

  • Ectoderm (from Greek ectos — outside) is the outermost germ layer of the embryo.
  • Endoderm (from Greek entos — inside) is the inner germ layer.
  • Mesoderm (from Greek mesos — middle) is the third, or middle, germ layer, developing between the first two.

Main Methods of Gastrulation

Depending on egg structure and animal species, biology distinguishes four basic types of gastrulation, as well as their combinations.

  1. Invagination (folding inward). In this mechanism, a specific area of the blastoderm at the vegetal pole begins to bend inward until it reaches the opposite animal pole. This forms a bilayered gastrula. The internal cellular layer (endoderm) thus lines the cavity of the archenteron, or gastrocoel. The opening connecting this cavity to the external environment is called the blastopore (primitive mouth). In protostomes (worms, mollusks, arthropods), the blastopore turns into the mouth opening. In deuterostomes (chordates, e.g., amphioxus), the anus forms at its site, while the true mouth breaks through at the opposite end of the body.
  1. Immigration (cell migration). Some blastoderm cells leave the embryo surface and move inward into the blastocoel cavity. Gradually, the blastocoel fills with these cells, forming an inner layer (endoderm) directly beneath the outer ectoderm. This type of development is characteristic of cnidarians.
  1. Epiboly (overgrowth). The process is driven by the rapid proliferation of small cells (micromeres) that overgrow the vegetal pole externally. As a result, larger cells (macromeres) end up inside the embryo. An important feature of epiboly is that no blastopore is formed and there is no gastrocoel. It occurs in amphibians and animals developing from telolecithal eggs.
  1. Delamination (splitting or delamination). Blastoderm cells divide in such a way that a single sheet splits into outer (ectoderm) and inner (endoderm) layers. This pathway is also characteristic of cnidarians.

A mixed type—a combination of different basic methods—is often found in nature. For example, birds and mammals exhibit a combination of immigration and delamination, while amphibians show epiboly combined with invagination.

Test your knowledge on the topicTasks from the "Biology" course bank — immediate answers and explanations.

Mesoderm Formation

The third germ layer (mesoderm) forms via two fundamentally different pathways, serving as an important criterion in animal classification.

MethodProcess CharacteristicsCharacteristic of
TeloblasticAt the border of the ectoderm and endoderm, along the edges of the blastopore, large cells called teloblasts are formed. They actively divide, giving rise to the mesoderm.Protostomes
EnterocoelousMesodermal cells isolate themselves as archenteron "pouches" or paired plates on either side of the notochord rudiment.Deuterostomes

Transition to Histo- and Organogenesis

Immediately after the completion of gastrulation and mesoderm formation, the stage of histo- and organogenesis begins. Histo- and organogenesis (from Latin histos — tissue) is the formation of specialized tissues and organs through cell differentiation.

Differentiation refers to the process of emergence and progressive increase of differences between cells of the developing embryo. These differences involve three aspects:

  • Morphological (changes in shape and structure);
  • Biochemical (synthesis of specific proteins);
  • Functional (acquisition of narrow specialization).

The pattern of organogenesis is such that axial organs are always laid down first, followed by all others. Notably, in amphioxus, the mesoderm forms not before, but simultaneously with the axial organ complex during organogenesis.

Briefly: answers to topical questions

Which specific organs and tissues form from the mesoderm during organogenesis?

The mesoderm gives rise to various tissues and organs of the musculoskeletal system, serous membranes, as well as the circulatory, lymphatic, excretory, and reproductive systems.

During histo- and organogenesis, it develops into:

  • Notochord
  • Skin dermis (from dermatomes)
  • Striated skeletal muscles of the body and limbs (from myotomes)
  • Vertebrae, ribs, and scapulae (via secondary mesenchyme of sclerotomes)
  • Excretory organs and gonads (from nephrotomes)
  • Mesothelium, myocardium, and epicardium (from splanchnotome layers)
  • Smooth muscle tissue, blood, vessels, microglia, and all types of connective tissue (from mesenchyme).

Which organ systems develop from the ectodermal germ layer?

The ectodermal germ layer gives rise to the nervous, sensory, endocrine, and digestive systems, as well as the integument.

  • Nervous system: brain and spinal cord (from the neural tube).
  • Integumentary system: epidermis and its derivatives (hair, nails, feathers, skin and mammary glands).
  • Dental system: tooth enamel.
  • Digestive system: oral cavity epithelium, anterior and posterior sections of the intestine.
  • Sensory systems: organs of vision, hearing, and olfaction.
  • Endocrine system: posterior pituitary gland, pineal gland.

What structures form from the endoderm during the histo- and organogenesis stage?

The endoderm gives rise to structures of the digestive, respiratory, and endocrine systems.

These include:

  • Digestive system: epithelium of the stomach and midgut, oral and pharyngeal cavities, tongue.
  • Glands: digestive glands (liver and pancreas).
  • Respiratory system: epithelium of the lungs and respiratory tract.
  • Endocrine system: anterior and intermediate lobes of the pituitary gland, thymus, thyroid, and parathyroid glands.
How to memorize

To remember the fate of the blastopore: in PROTOSTOMES it becomes the mouth (the first opening), whereas in DEUTEROSTOMES the mouth forms secondarily at the opposite end of the body.

Class and exam questions

What is the difference between the gastrocoel and the blastocoel?

The blastocoel is the cavity inside the blastula, into which cells migrate during immigration. The gastrocoel is the cavity of the primitive gut, formed by invagination and communicating with the external environment through the blastopore.

Which animals lack a mesoderm?

The third germ layer (mesoderm) is absent in sponges and cnidarians. Their development halts at the bilayered embryo stage (ectoderm and endoderm).

What are teloblasts?

These are specialized cells that originate at the border of the ectoderm and endoderm along the margins of the blastopore in protostomes. Through their division via the teloblastic method, the mesoderm is formed.

Does a blastopore form during epiboly?

No. During epiboly, micromeres simply overgrow macromeres, so blastopore formation does not occur and the gastrocoel is absent.

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What else to study on this topic

  • Morphological, biochemical, and functional differentiation of cells
  • Histogenesis and organogenesis: sequence of system development
  • Formation of the axial organ complex in deuterostomes
  • Specifics of embryonic development and notochord formation in amphioxus

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