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Physiology · General Physiology of the CNS

Methods for studying the central nervous system

Various instrumental approaches are used in physiology and medicine for a detailed study of the central nervous system. They allow for an extremely precise assessment of the topography of deep brain nuclei, the detection of pathological tissue displacements, and the acquisition of an in vivo three-dimensional picture of structures based on their physical density.

StereotaxisUses three coordinates for the high-precision insertion of electrodes into deep brain structures.
M-echoReflects the state of midline structures by detecting their pathological displacement of 1–2 mm.
TomographyForms a layered three-dimensional anatomical model based on X-ray absorption.
4 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

Stereotaxic technique

This method is indispensable for studying brain topography and the targeted insertion of recording or stimulating electrodes into its deep structures. The fundamental operating principle consists of determining the position of the required nucleus or pathway strictly along three spatial coordinates.

The reference point is provided by anatomical landmarks on the cranial bones (in animal experiments) or internal landmarks of the brain itself (during neurosurgical operations in humans). The procedure is performed using a stereotaxic device, which includes two mandatory parts:

  • Headholder — ensures rigid and reliable fixation of the head.
  • Positioning system — allows for the smooth movement of the instrument along a polar or Cartesian coordinate system.

To calculate the precise insertion site, specialists use detailed brain atlases. These present layered frontal slices indicating the location of all formations relative to the sagittal and basal planes.

Depending on the objective, studies are conducted in two formats:

  1. Acute experiment — performed on anesthetized animals.
  2. Chronic experiment — involves electrode implantation surgery performed under strict sterile conditions.

In addition to classical recording of bioelectrical activity, stimulation, or local tissue destruction, the stereotaxic technique is used for targeted cannula placement (to administer substances or collect samples) and devices for local cooling of brain structures.

Ultrasonic echoencephalography (EchoEG)

The physical basis of this diagnostic method is the ability of ultrasonic waves to penetrate cranial bones and reflect from the boundaries of anatomical zones with different densities. The main goal of EchoEG is to determine whether there is a displacement of the midline structures of the brain.

During the examination, ultrasound emitters and receivers are placed exclusively in the temporal regions of the patient's head. The resulting curve (echoencephalogram) is traditionally divided into three components:

  • Initial complex — the result of wave reflection from the skin and bones on the side of the active emitter.
  • Midline complex (M-echo) — the most important signal reflected from centrally located structures: the third ventricle, septum pellucidum, and pineal gland (epiphysis).
  • Final complex — the signal returning from the skin and bone coverings of the opposite side of the cranium.

Normally, if the emitters are positioned on the left and right, the echoes are completely symmetrical. However, if pathology is present (e.g., intracranial hemorrhage), the distance to the M-echo on one side becomes smaller than on the other. The magnitude of this displacement is calculated from the difference in measurements.

The method has high sensitivity and detects structural deviations of just 1–2 millimeters. Due to the portability of the equipment and simplicity of execution, the examination can be performed urgently right at the patient's location. There is a strict clinical rule: if reliable signs of midline structure displacement are detected, this is a direct indication for an immediate in-depth examination.

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Neuroimaging methods and CT

X-ray approaches are based on the varying levels of X-ray absorption by different tissues. However, the natural ability of brain structures to transmit such rays differs extremely weakly. Because of this low contrast, additional techniques must be used for quality neurovisualization. Most commonly, special radiopaque agents are injected into the vascular bed or cerebrospinal canal, and special image analysis algorithms are employed.

The most informative method in this group is X-ray computed tomography (CT). Its operating principle is significantly more complex than a conventional X-ray:

  • The radiation source is not fixed; it constantly moves.
  • A very narrow X-ray beam passes through the head at multiple different angles.
  • The obtained data are processed using mathematical algorithms.

The system models the arrangement of structures layer by layer, relying exclusively on their physical density (the ability to attenuate X-rays). As a result, the physician obtains a detailed spatial reconstruction of several layers. The outcome of the study is a high-precision in vivo three-dimensional anatomical picture of the brain, making it possible to detect the slightest pathological changes.

How to memorize

To easily remember what forms the M-echo (midline complex) during EchoEG, use the acronym TSP: Third ventricle, Pineal gland, Septum pellucidum.

Class and exam questions

Why are brain atlases used during stereotaxic surgeries?

Atlases contain sequential frontal brain sections. They are essential for precise mathematical calculation of electrode insertion coordinates relative to the sagittal and basal planes.

What does asymmetry of the M-echo indicate during an ultrasound examination?

If the distance to the M-echo on one side is smaller than on the other, this indicates a pathological displacement of the midline brain structures (e.g., due to hemorrhage).

Why do conventional brain X-rays often require contrast agents?

Brain tissues have extremely low natural contrast and transmit X-rays almost equally. Contrast administration into the vessels or cerebrospinal canal is necessary for their clear visualization.

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What else to study on this topic

  • Mathematical modeling of tissue density in computed tomography
  • Features of conducting acute and chronic electrophysiological experiments
  • Calculation of the magnitude of pathological structural displacement based on signal differences in EchoEG
  • Use of polar and Cartesian coordinate systems in stereotaxis
  • Topography of the septum pellucidum, pineal gland, and third ventricle

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