Log in
Microbiology · Immunoprophylaxis Agents

Molecular and synthetic vaccines

Molecular vaccines are preparations in which the antigen is represented not by a whole microorganism, but by its specific fragments (epitopes). To enhance the immune response, such isolated antigens are combined with polymer carriers, creating highly effective synthetic vaccines.

Sources of antigens:Biological or chemical synthesis, as well as genetic engineering
Production of toxoids:Exposure to 0.4% formaldehyde and 37 °C for 3–4 weeks
Polymeric carrier:Acts as a carrier that enlarges the antigen and simultaneously functions as an adjuvant
Multicomponent nature:Associated vaccines protect against multiple infections at once without overloading the immune system
4 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

Methods for producing molecular vaccines

Molecular vaccines are based on the use of purified antigens—molecules or small fragments thereof that are recognized by our immune system. Since the preparation contains no whole pathogens, such vaccines are considered maximally safe and precisely targeted.

There are three main methods for obtaining the required protective antigen:

  • Biological synthesis. The target molecules are isolated from cultures of natural bacteria or viruses directly during their cultivation.
  • Genetic engineering (recombinant technologies). The pathogen's gene is inserted into the genome of harmless microbes, forcing them to synthesize a foreign antigen. A classic clinical example is the hepatitis B vaccine, where the protective antigen is produced by a recombinant strain of common yeast. This method is also actively used to develop preparations against HIV, malaria, syphilis, and influenza.
  • Chemical synthesis. Artificial reconstruction of the antigen determinant "in vitro" after full decoding of its chemical structure.

Toxoids as a classical example

An important group of molecular vaccines is toxoids. They build immunity not against the microbe itself, but against the toxin it produces. Mass immunization with diphtheria and tetanus toxoids has dramatically reduced morbidity and eliminated epidemics. There are also preparations against botulism, gas gangrene (caused by Cl. perfringens and Cl. novyi), cholera, and staphylococcal infections.

Their production technology is strictly regulated and includes several stages:

  1. Cultivation: large-scale cultivation of bacteria for exotoxin production.
  2. Inactivation: the exotoxin is treated with a 0.4% formaldehyde solution and kept warm (37 °C) for 3–4 weeks. The molecule completely loses its toxicity while retaining its specific antigenicity.
  3. Purification and concentration: removal of ballast microbial metabolic products and remnants of the nutrient medium.
  4. Sorption (addition of an adjuvant): to enhance immunogenicity, sorbents (aluminum hydroxide gel or aluminum phosphate) are added to the preparation.

Finished toxoids are administered subcutaneously or intramuscularly. Their dosage is measured in special units: IU (antitoxin-binding units) or Lf (flocculation units).

Test your knowledge on this topicAssignments from the Microbiology course bank — instant answers and explanations.

Synthetic vaccines: solving the problem of low immunogenicity

The main problem with isolated molecules (or epitopes) is their extremely low immunogenicity. Upon entering the body, they fail to elicit a full-fledged immune response for two reasons:

  • They are rapidly degraded by tissue enzymes.
  • Their low molecular weight prevents them from fully attaching (adhering) to the receptors of immunocompetent cells.

To transform a weak molecular stimulus into a potent synthetic vaccine, researchers artificially enlarge the antigen. To do this, the antigenic determinant is chemically or physically/chemically "conjugated" to a high-molecular-weight carrier—a safe polymer (e.g., polyvinylpyrrolidone). In such a design, the polymer performs two functions simultaneously: it acts as a transporter ("schlapper") and as an adjuvant.

Such modification provides powerful immunological advantages:

  • Transforms T-dependent antigens into T-independent ones.
  • Ensures prolonged circulation of the preparation in the body.
  • Significantly facilitates the adhesion of molecules by immune cells.

Note: In the Russian Federation, the development of such vaccines is actively pursued by the school of R.V. Petrov and R.M. Khaitov, an example being the influenza vaccine based on the polymer polyoxidonium.

Associated (multicomponent) vaccines

To optimize the immunization schedule, reduce the number of injections, and minimize doctor visits during mass prophylaxis, associated vaccines are created. These are preparations containing several distinct antigens simultaneously (including live or inactivated components). The human immune system is physiologically capable of reacting to dozens of antigens at once without overload, yet the primary technological challenge is achieving a perfectly balanced composition to prevent antigen competition and excessive reactions.

Depending on the nature of the constituent antigens, two types of such vaccines are distinguished:

  • Polyvalent vaccines. Contain homogeneous antigens (different types or strains of the same pathogen). For example, oral polio vaccine (types I, II, and III viruses) or polytoxoid (a mixture of toxoids against botulism, tetanus, and gas gangrene).
  • Combined vaccines. Consist of heterogeneous antigens directed against completely different diseases. A classic example is the DTP vaccine, containing the whole-cell pertussis component along with tetanus and diphtheria toxoids, as well as the MMR vaccine (measles, mumps, and rubella).

Briefly: answers to topical questions

What are the absolute contraindications to the administration of the combined DTP vaccine?

Contraindications to the administration of the combined DTP vaccine include progressive neurological diseases and afebrile seizures of unknown origin, as vaccination increases the risk of provoking seizure disorders.

How to memorize

To memorize the composition of the classical combined DTP vaccine, let us break down its acronym: "D" stands for adsorbed base (adjuvant), "TP" for Tetanus and Pertussis, combined with Diphtheria (DTP covers Diphtheria, Tetanus, and Pertussis). It is important to remember that the pertussis component is whole-cell, while diphtheria and tetanus are represented by toxoids.

Class and exam questions

How does an anatoxin fundamentally differ from an exotoxin?

An anatoxin (toxoid) is derived from an exotoxin through prolonged exposure to formaldehyde (0.4%) and temperature (37 °C). It is entirely devoid of toxic properties while retaining the ability to stimulate the production of specific protective antibodies.

Why do pure molecular antigens have low immunogenicity?

They have too low a molecular weight and rapidly undergo enzymatic degradation in the body. As a result, immunocompetent cells cannot properly bind to them to trigger the cascade of the immune response.

What are associated vaccines and why are they used?

These are preparations containing several different antigens in a single dose. They are used for convenience and to optimize the immunization schedule, protecting a person against multiple infections with a single injection.

Still have questions? Ask the AIThe AI tutor has reviewed the material on "Molecular and synthetic vaccines" and will explain it in simple terms.

What else to study on this topic

  • Units of toxoid dosage (Lf and IU) and their biological significance in immunology
  • Mechanisms of transforming T-dependent antigens into T-independent ones using polymer carriers
  • The role of aluminum hydroxide and aluminum phosphate in forming an antigen depot
  • Principles of preventing antigenic competition in combined vaccines
  • Stages of creating recombinant vaccines using the hepatitis B vaccine as an example

Study the full topic in the «Microbiology» course

This is a summary. The course covers everything tested in classes and exams.

  • Complete study guide on "Molecular and synthetic vaccines" and 4,383 more pages of the subject
  • Assignments and quizzes after every topic — just like in a colloquium
  • AI tutor answers questions on the topic anytime
  • 141 video lectures on the subject

Other topics in the «Immunoprophylaxis Agents» section

Entire section «Immunoprophylaxis Agents»

Free video lessons: microbiologyShort lessons with study notes — no registration required.

Watch lessons

Prepared by WhiteCoat Pro faculty in accordance with the medical school curriculum. For educational purposes only.