Log in
Histology · Gastrulation, formation of axial organ rudiments, and extraembryonic membranes

Notogenesis

Notogenesis

Notogenesis is a crucial stage of embryonic development that occurs immediately after gastrulation. During this period, the axial organ complex is laid down from the three germ layers (ectoderm, mesoderm, and endoderm), and the embryo transforms from a flat disc into a three-dimensional structure due to the formation of body folds and separation from the yolk sac.

Model organismIn histology, this process is traditionally studied on chicken embryo sections; the mechanisms are similar to human ones
Fate of the notochordThe only unpaired structure of the mesoderm. In adults, it persists as the nucleus pulposus of the intervertebral discs
Number of somitesIn chicken embryos at the notogenesis stage, there are 10–11 pairs, whereas in humans, a total of 44 pairs eventually form
Inductor of neurulationThe formation of the neural tube from the ectoderm is triggered by the chemical influence of the notochord
4 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

Mesodermal differentiation

The development of the middle germ layer proceeds in several directions, forming the most important axial structures.

  1. Notochord (Chorda) — a dense unpaired cord of cells located strictly along the central axis. Cells for it migrate from the epiblast through the primitive pit. The notochord defines the body axis around which the vertebral column will later form.
  2. Somites (Somiti) — dorsal paraxial mesoderm. These are compact paired cell clusters on either side of the notochord. Somite segmentation proceeds in a craniocaudal direction (from head to tail). Each somite divides into three functional zones:
  3. Dermatome (outer part) — source of the dermis of the skin.
  4. Myotome (middle part) — precursor of skeletal musculature.
  5. Sclerotome (inner part) — source of development for the bones and cartilage of the axial skeleton.
  6. Nephrogonotomes (Nephrogonotomes) — intermediate mesoderm (segmental stalks), connecting the somites to the lateral plate. At the cranial end they are segmented, while in the lower half of the body they merge into a continuous nephrogenic cord. These are the precursors of the urinary and reproductive systems (specifically, tubules form within them).
  7. Splanchnotome — lateral, unsegmented part of the mesoderm. It splits into two layers: parietal (adjacent to the ectoderm) and visceral (adjacent to the endoderm). The space between them is the coelomic cavity (future pleural, pericardial, and abdominal cavities). Both layers give rise to the mesothelium of the serous membranes, while the myocardium and epicardium develop specifically from the visceral layer.

Origin and role of mesenchyme

Mesenchyme — an embryonic tissue consisting of mobile, branching cells that fill the spaces between organ primordia. Mesenchymal cells migrate predominantly from the somites (dermatomes and sclerotomes) as well as from the splanchnotomes.

This universal precursor gives rise to internal environment tissues and smooth musculature. Derivatives of mesenchyme include all types of connective tissue (including bone and cartilage), hematopoietic tissue, blood cells, and blood vessels (at the stage of formed axial primordia, primary blood cells are already visible within the vessel lumens).

Test your knowledge on the topicTasks from the Histology course bank — instant answers and explanations.

Ectodermal differentiation and neurulation

The outer germ layer gives rise to two lineages: neuroectoderm and surface ectoderm.

Neurulation (formation of the nervous system) begins under the inducing influence of the notochord. The embryonic stage during this period is called the neurula. The process includes several steps:

  1. Thickening of the ectoderm — formation of the neural plate.
  2. Invagination of the plate with the formation of the neural groove and neural folds at the edges.
  3. Fusion of the edges into the neural tube, which sinks beneath the ectoderm. The central nervous system (brain and spinal cord) will develop from it.
  4. Formation of the neural crest (ganglion plate) from the material of the folds. It gives rise to the peripheral nervous system, adrenal medulla, and melanocytes.

The remaining surface surface ectoderm serves as the source for the epidermis and its derivatives (hair, nails, glands), as well as the epithelium of the initial (oral cavity) and terminal (anal canal) parts of the digestive tract.

Endodermal transformations

Initially, the gut endoderm is a thin, single-layered sheet of flat cells. During notogenesis, this sheet, together with the tightly adjacent visceral layer of the splanchnotome, rolls up to form a closed primary gut tube.

This axial precursor subsequently forms the epithelial lining of the stomach and intestines, as well as the parenchyma of the major digestive glands — the liver and pancreas.

Briefly: answers to topical questions

Which specific organs do nephrogonotomes and the nephrogenic cord differentiate into?

Nephrogonotomes (segmental stalks) are the precursors of the urinary and reproductive systems.

  • Nephrogonotome differentiates into the nephrons of the pronephros/mesonephros; in male fetuses, into the efferent ductules of the testis.
  • Nephrogenic cord: sources explicitly state that tubules form within the nephrogenic cords during the development of the metanephros.

Which cells of neural tissue develop not from the neuroectoderm, but from mesenchyme?

Microglial cells develop from mesenchyme.

  • Microglia — glial macrophages of the central nervous system.
  • Functionally, they are phagocytes.
  • Sources also indicate that microglia develop from promonocytes, unlike other gliocytes.
How to memorize

For quick memorization of the three parts of a somite, use the abbreviation DMS: Dermatome (Dermis), Myotome (Muscles), Sclerotome (Skeleton).

Class and exam questions

What is the neurula stage and what characterizes it?

The neurula is a stage of embryogenesis during which the neural tube (neurulation) and other axial organs are established. The process is induced by the notochord.

What do blood vessels and blood originate from?

The vascular system and blood cells develop from mesenchyme — mobile branching cells that migrated from various regions of the mesoderm into the spaces between primordia.

What is the difference between the derivatives of the neural tube and the neural crest?

The neural tube gives rise exclusively to CNS organs (spinal cord and brain). The neural crest forms peripheral ganglia, skin pigment cells, and the adrenal medulla.

Something unclear? Ask the AIThe AI tutor has reviewed the material on 'Notogenesis' and will explain it in simple terms.

What else to study on this topic

  • Mechanisms of embryonic induction (role of the notochord)
  • Histogenesis of internal environment tissues from mesenchyme
  • Formation and division of the coelomic cavity
  • Development of surface ectoderm derivatives
  • Spatial reorganization of the embryo (body folds)

Master the entire topic in the "Histology" course

This is a summary. The course covers everything tested in classes and exams.

  • Complete study guide on 'Notogenesis' and 3,485 more pages of the subject
  • Assignments and quizzes after every topic — just like in a colloquium
  • AI tutor answers questions on the topic anytime
  • 137 video lessons on the subject

Other topics in "Gastrulation, formation of axial organ rudiments, and extraembryonic membranes"

Entire section "Gastrulation, formation of axial organ rudiments, and extraembryonic membranes"

Free video lessons: histologyShort lessons with study notes — no registration required.

Watch lessons

Prepared by WhiteCoat Pro faculty in accordance with the medical school curriculum. For educational purposes only.