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Histology · Cell nucleus. Cell division

Human karyotype

Karyotypus

Karyotype is the set of number, size, and specific structural features of chromosomes. As a rule, this concept is introduced and considered in the context of maximum condensation of genetic material by the beginning of metaphase, when the structures are most clearly visible.

Normal setThe human somatic cells contain exactly 46 chromosomes (23 pairs).
Autosomes22 pairs of chromosomes are completely identical in men and women.
Sex chromosomesIn women, the pair is represented by XX, and in men, by XY (the Y chromosome is half as short).
PathologiesDown syndrome occurs due to the presence of a third chromosome in the 21st pair.
4 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

General organization of the human karyotype

The normal human karyotype has a strict quantitative and structural organization. The nucleus of each somatic cell contains genetic material distributed across 46 chromosomes. During the systematization process, they are conventionally grouped into 23 homologous pairs.

All pairs are classified into two major categories:

  • Autosomes. These are 22 pairs of chromosomes that are completely identical in individuals of both sexes.
  • Sex chromosomes. This is only 1 pair, but it is responsible for sex determination. In females, this pair consists of two structures of equal size (XX). In males, the pair is heterogenic (XY), with one important morphological feature being that the Y chromosome is approximately half as short as its partner, the X chromosome.

For convenience of study and diagnosis, all human chromosomes are divided into 7 groups. Their size and shape serve as the basis for this division.

Chromosome morphology in different phases of division

The appearance of the genetic material varies depending on the phase of the cell cycle. To characterize the karyotype, reference publications may use sets of both metaphase and anaphase chromosomes.

  1. Metaphase chromosomes. During this period, they have a characteristic X-shape. Each such structure consists of two sister chromatids. It is important to note that the separation process already begins in metaphase: the chromatids repel each other but are still securely held together in a specialized region—the centromere.
  2. Anaphase chromosomes. At this stage, the sister chromatids finally separate, turning into full-fledged daughter chromosomes. Because of this, their shape changes radically: they cease to be X-shaped and become rod-shaped (visually, these can be straight or slightly curved rods).
Test your knowledge on the topicTasks from the Histology course bank — instant answers and explanations.

Internal structure of an individual chromosome

When considering an isolated chromosome, several key anatomical elements can be distinguished, each performing its own function:

  • Centromere (primary constriction). This is a narrowed region that divides the single body of the chromosome into two arms.
  • Kinetochore. A complex protein structure located directly in the centromere region. Its main role is to serve as the attachment point for spindle fibers during the separation of genetic material.
  • Telomeres. This is the name for the terminal regions of the chromosome arms.
  • Secondary constriction. This element is not present on all chromosomes. Where it is present, the secondary constriction performs a vital function: it is the exact location of the genes responsible for the synthesis of ribosomal RNAs (rRNA).

Chromosome types and clinical significance

The morphological classification of chromosomes is based on the exact location of the centromere (primary constriction) relative to the ends of the structure. Three main types are distinguished:

  1. Metacentric. The centromere is located strictly in the middle, so both arms are of equal length (a classic example is the 1st chromosome).
  2. Submetacentric. The primary constriction is shifted from the center, causing the arms to be of unequal length (example: the 7th chromosome).
  3. Acrocentric. The centromere is shifted so close to the very edge that one arm is almost completely absent (example: the 21st chromosome).

Clinical significance of studying the karyotype is immense. Any deviation from the described norm (in number or structure) leads to the development of chromosomal diseases. A striking clinical example is Down syndrome. In this pathology, an abnormality is detected in the karyotype: in the 21st pair of acrocentric chromosomes, instead of two normal elements, an additional (third) chromosome is present.

Briefly: answers to topical questions

On which exact pairs of human chromosomes is the secondary constriction located?

The secondary constriction in humans is located on five pairs of acrocentric chromosomes.

These include:

  • Autosomes — pairs 13, 14, 15, 21, and 22.

These constrictions are located on the short arms of these chromosomes and correspond to the nucleolar organizer regions. These regions contain numerous copies of ribosomal genes encoding ribosomal RNA (rRNA). It is around these regions that the nucleolus is formed in the interphase nucleus.

How to memorize

To remember chromosome types by centromere position, use associations: Metacentric — "Median" (strictly in the center, arms are equal), Submetacentric — "Shifted" (arms are unequal), Acrocentric — "Asymmetry at the Edge" (one arm is almost missing).

Class and exam questions

Why is it standard practice to describe the karyotype specifically during metaphase?

By the beginning of metaphase, chromosomes reach their maximum degree of condensation. They acquire a distinct X-shape and become best visible under microscopy.

How do metaphase chromosomes differ from anaphase chromosomes?

Metaphase chromosomes are X-shaped and consist of two linked chromatids. In anaphase, they separate, turning into rod-shaped daughter chromosomes.

What is a kinetochore and where is it located?

This is a specialized protein structure localized in the region of the centromere (primary constriction) that serves as the attachment site for spindle fibers.

What is the genetic cause of Down syndrome?

The pathology arises due to a deviation of the karyotype from normal: the 21st pair contains not two, but an additional third chromosome.

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What else to study on this topic

  • Principles of dividing human chromosomes into 7 morphological groups
  • Functions of ribosomal RNA genes in secondary constrictions
  • Mechanisms of sister chromatid separation in anaphase
  • The role and significance of chromosome terminal regions (telomeres)

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