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Biology · Phylogeny of the vertebrate nervous system

Brain embryogenesis

Brain embryogenesis is a complex process of transformation of the rostral end of the neural tube. It passes through the three- and five-vesicle stages, from which all brain regions and the ventricular system subsequently develop.

IntroductionThe development of forebrain structures begins on the 22nd day of embryonic development.
CavitiesThe primary space of the neural tube (neurocoele) transforms into the ventricular system.
PathologyImpaired cleavage of the primary optic vesicles during embryogenesis leads to cyclopia.
Mature BrainThe cortex and corpus callosum are clearly distinguishable on a sagittal section of the developed brain.
5 min readFor medical studentsUpdated 09/24/2026
Material prepared by WhiteCoat Pro editorial team based on platform study guidesReviewed by medical editor: Aulov A. A., general practitioner · 09/24/2026

Initial Stage and Structure Formation

The formation of the central nervous system starts with the creation of a primary swelling at the most rostral (cranial) end of the neural tube. This complex process begins as early as the 22nd day of embryonic development. It is at this moment that the foundations of the future forebrain are laid down.

Simultaneously with the growth of the neural tube, the visual apparatus forms: specialized structures—optic cups—evaginate on the sides of the future diencephalon. By the fourth week of development, the lens epithelium begins to invaginate. It is important to note that the division of the primary optic vesicles is critical: if it is disrupted, the fetus develops a severe developmental pathology known as cyclopia. By the fifth week, the embryo progresses to the next stages of active organogenesis.

Three-Vesicle Stage

Soon, the primary expansion of the neural tube divides into three distinct regions, forming the three-vesicle brain stage. At this stage, the basic major divisions of the future brain are established:

  • Forebrain (Prosencephalon);
  • Midbrain (Mesencephalon);
  • Hindbrain (Rhombencephalon), also referred to as the primary hindbrain.

This stage is fundamental for the proper development of the entire nervous system. If developmental timing is disrupted (heterochrony) and the rostral part of the neural tube arrests growth precisely at the three-vesicle stage, a severe malformation—atelencephaly—develops. The primary consequence of this pathology is the complete absence of the cerebral hemispheres and subcortical nuclei.

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Five-Vesicle Stage

As the embryo grows (during the period when its length reaches 10.2–13.6 mm), further differentiation occurs. The three-vesicle stage transitions into the five-vesicle brain stage:

  • The primary forebrain (Prosencephalon) undergoes division into the telencephalon (Telencephalon) and diencephalon (Diencephalon).
  • The primary midbrain (Mesencephalon) does not divide and retains its original name, forming all midbrain structures.
  • The primary hindbrain (Rhombencephalon) gives rise to two structures: the metencephalon (Metencephalon), which will later include the pons and cerebellum, and the medulla oblongata (Medulla oblongata). A distinguishing feature of the medulla oblongata is that it lacks a sharp inferior border and transitions smoothly into the spinal cord tissue.

When the fetus measures between 50 and 130 mm, a progressive and very rapid growth of the telencephalic structures (Telencephalon) is observed. The cerebral hemispheres expand so intensively that they begin to physically cover the underlying structures (diencephalon and mesencephalon). Concurrently, the neural tube forms characteristic flexures. As a result, the formed brain acquires a developed cortex, corpus callosum, and all necessary brainstem structures.

Transformation of the Neurocoele into Ventricles

The neural tube is initially a hollow structure. Its internal space, called the neurocoele, does not disappear during embryogenesis, but undergoes complex transformation. The ventricular system of the brain is formed from the cavities of the primary brain vesicles:

  1. In the growing cerebral hemispheres (Telencephalon), the cavities of the neurocoele expand significantly, forming the left and right lateral ventricles. As an interesting comparative anatomy fact, in fish these spaces are not separated from each other and form a single common cavity.
  2. The cavity of the diencephalon (Diencephalon) transforms into the third ventricle.
  3. In the region of the midbrain (Mesencephalon), the wide cavity narrows significantly, forming a narrow cleft. This structure is called the cerebral aqueduct (or aqueduct of Sylvius) and serves as a channel connecting the ventricles to each other.
  4. The cavity in the area of the medulla oblongata (Medulla oblongata) expands and forms the fourth ventricle. Inferiorly, it communicates directly with the central canal of the spinal cord, ensuring fluid circulation within the central nervous system.

Briefly: answers to topical questions

From which brain vesicle do the basal nuclei (subcortical structures) develop?

The basal nuclei (subcortical structures) develop from the forebrain vesicle (Prosencephalon), specifically from its derivative — the telencephalon (Telencephalon). If development of the anterior neural tube is arrested, the subcortical nuclei do not form. The basal nuclei include:

  • Corpus striatum (corpus striatum) — includes the caudate nucleus and putamen.
  • Lentiform nucleus (nucleus lentiformis) — part of the striatum.
  • Globus pallidus (globus pallidus) — a subcortical component of the telencephalon.
  • Claustrum (claustrum) — a sheet of gray matter.
  • Amygdala (corpus amygdaloideum) — a structure located within the white matter of the hemispheres.

Which structures form the walls and roof of the fourth ventricle?

The roof of the fourth ventricle is formed by the superior medullary velum, the cerebellar peduncles, and the cerebellum itself. The floor and lateral borders are formed by the following structures:

  • Rhomboid fossa (fossa rhomboidea) — forms the floor of the ventricle, located on the dorsal surface of the pons and medulla oblongata.
  • Superior and inferior cerebellar peduncles — border the floor of the fourth ventricle laterally.

From the inside, the ventricular cavity, like the entire ventricular system, is lined with ependyma.

How to memorize

To remember the derivatives of the hindbrain, imagine a rhombus: its upper angle is the metencephalon (pons and cerebellum), and the lower angle is the medulla oblongata, which smoothly transitions inferiorly into the spinal cord.

Class and exam questions

From which primary brain vesicle do the lateral ventricles develop?

The lateral ventricles develop from the expanded cavities of the prosencephalon, specifically from the structures of the telencephalon (Telencephalon).

What happens to the midbrain vesicle (Mesencephalon) at the five-vesicle stage?

The midbrain vesicle does not undergo division. It retains its integrity and gives rise to the midbrain structures, while its cavity turns into the cerebral aqueduct.

What are the consequences of developmental arrest at the three-brain-vesicle stage?

Arrested development of the anterior neural tube (heterochronia) at this stage leads to atelencephaly. In this pathology, the fetus fails to develop the cerebral hemispheres and subcortical nuclei.

At what gestational age does forebrain formation begin?

The formation of the primary swelling at the rostral end of the neural tube begins approximately on the 22nd day of embryonic development.

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What else to study on this topic

  • Detailed anatomy of the telencephalon and cerebral hemispheres
  • Spatial formation of brain tube flexures
  • Development of the cerebral cortex and corpus callosum
  • Comparative anatomy of the development of the ventricular system in vertebrates

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