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Microbiology

Microbial Physiology

29 topics with concise summaries: definitions, key facts, and classroom questions.

Microbial physiology is a branch of microbiology that studies the vital activity mechanisms of microorganisms. Here we examine how bacteria, fungi, protozoa, and viruses produce energy, grow, reproduce, and interact with host cells.

The material of this section is divided into three main blocks. The first is dedicated to cellular forms: from the chemical composition, constructive metabolism, and types of bacterial respiration to nutrient media and cultivation conditions. The second block details viral life cycles — from replication mechanisms of various genomes (retroviruses, hepadnaviruses, plus- and minus-strand RNA viruses) to integrative infection and persistence. The third block focuses on bacteriophages, the phenomena of lysogeny, and the medical applications of phages.

Classes and exams traditionally require a deep understanding of bacterial metabolic pathways (especially the differences between fermentation and respiration), the reproduction mechanisms of specific viral groups, and types of viral infection. Without this foundational knowledge, it is impossible to understand the pathogenesis of infectious diseases and the principles of antimicrobial drugs.

Section Topics

Chemical composition of bacteriaA bacterial cell consists of 80–90% water, which provides intracellularBacterial nutritionBacterial nutrition is the set of processes involved in the assimilation of substances necessarNutrient media for bacteriaArtificial nutrient media are the foundation of any microbiologicaBacterial metabolismBacterial metabolism is a complex of biochemical reactions that providFermentationFermentation is an oxygen-free method of energy production, Bacterial respirationBacterial respiration is a biochemical process of energy production in whicBacterial constructive metabolismBacterial constructive metabolism (anabolism) is a crucial processSubstance transport and secretion in bacteriaBacteria continuously exchange substances with the environment in order toDNA replication in bacteriaDNA replication in bacteria is a semiconservative process of genome duplicationBacterial growth and reproductionBacterial growth is the coordinated increase in the quantity of all structuralBacterial cultivation conditionsSuccessful cultivation of microorganisms in laboratory conditions requires sFungal physiologyFungi represent a unique group of microorganisms with specificProtozoan physiologyProtozoan physiology is characterized by the performance of all vitalViral reproductionViral reproduction is the process of viral particle propagation withiViral genome replicationViral genome replication is the process of viral nucleic acid synthesisReproduction of hepadnavirusesHepadnaviridaeReproduction of minus-strand RNA virusesMinus-strand RNA viruses contain a genome that cannot directlyReproduction of retrovirusesRetroviridaeReproduction of plus-strand RNA virusesThe main feature of plus-strand RNA viruses is that thViral formation and assemblyVirion assembly is the final stage of the intracellular reproductioAbortive infectionAbortive infection is a specific type of virus-cell interactioIntegrative infection (Virogeny)Virogeny (integrative infection) is a special type of virus-cell interactioPersistence and latent viral infectionPersistence is the phenomenon of long-term, "persistent" preservation of genetiViral cultivationViral cultivation is the process of artificial accumulation of viraCell cultures in virologyThe cell culture method is the main modern tool of virology. ItViral indicationViral indication is the detection of the fact of their reproduction in an infected BacteriophagesBacteriophagaTemperate bacteriophages and lysogenyTemperate bacteriophages are capable not only of destroying the bacterial celPractical applications of bacteriophagesBacteriophages have become an indispensable tool in modern medicine du

Frequently asked questions for this section

What will happen to a bacterial cell when water is removed?

Reproduction and metabolic reactions will stop, but the cell will not die. This principle is the basis for microbial preservation via lyophilization.

What is the fundamental difference between lithotrophs and organotrophs?

Both groups belong to chemotrophs, but lithotrophs oxidize inorganic substances (hydrogen sulfide, ammonia, iron ions) as electron donors, while organotrophs use organic compounds for this purpose.

Why is sucrose added to the medium for cultivating mycoplasmas?

Mycoplasmas and bacterial L-forms lack a rigid cell wall that protects against osmotic pressure. Sucrose creates a hypertonic environment, preventing osmotic lysis (destruction) of the cells.

Where is the respiratory chain localized in bacteria?

The process occurs on the cytoplasmic membrane and intracellular membrane structures (its derivatives), as bacteria lack mitochondria.

How does fermentation differ from respiration?

In fermentation, organic compounds act as hydrogen acceptors, and the process proceeds without oxygen. In respiration, the acceptor is an inorganic substance.

Why do strict anaerobes die in the presence of oxygen?

They lack protective enzymes (catalase and peroxidase) capable of neutralizing toxic oxidation products—hydrogen peroxide and the superoxide radical.

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